Tag Archives: freesurfer

Freesurfer

  • http://freesurfer.net/
  • http://surfer.nmr.mgh.harvard.edu/
  • An open source software suite for processing and analyzing (human) brain MRI images.
  • Runs on:  Linux, Mac
  • cd /usr/local
  • wget -c ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz
  • tar zxf freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz
  • ssh -Y <name>@<server>
    $ csh (bash to change back)
    <server>:~> setenv FREESURFER_HOME /usr/local/freesurfer
    <server>:~> source $FREESURFER_HOME/SetUpFreeSurfer.csh
    <server>:~> tkmedit bert orig.mgz
  • Freesurfer license (free): http://surfer.nmr.mgh.harvard.edu